LSKB SYSTEM and INTEGRATION

System Requirements

Database System
CPU: DualCore+/Memory: 8GB+/
HDD: System Area 5GB(Bio knowledge Data 200GB+/Chem Knowledge Data 500GB+)
OS: Linux [RedHat(32bit or 64bit)]
Windows [XP(sp3)/V7 (32 or 64bit) / 2008Ser verR2
Database: Oracle10g(10.2)
APP Server: Tomcat 6.0(with JavaSE6)


Client (Web Browser)
PC: Windows XP(sp3)/7 (32 or 64bit)
Browser:IE8+ / FireFox9+
Mac: OSX10.6+ Browser:Safari5+


Chem Knowledge database
Accelrys Direct 7.0 (Accelrys Inc.)

J Chem cartridge 5.X for Oracle (ChemAxon)

Client　PDB Viewer

Benchware 3D Explorer (Tripos) Windows only

About Chemical Structure Search Engine

Followings have been evaluated;

- the performance with Accelrys Direct and web interface by Pipeline pilot
- The J Chem Cartridge for Oracle with the web-interface are evaluated.
It is possible to integrate our database to other Structure Search Engines.
Please contact us for details.

Free Modules for Analysis

We provide the free modules in order to use more convenient LSKB. Those are downloaded from our LSKB support web site.
- Automatic annotation for Exome sequence
- PCA / SOM / Cluster analysis modules are ready to use

Connection with Third Party Softwares

We are welcome to corroborate with the other analytical or database softwares. We have been developed the modules with/for the other softwares, such as pipelines software, off-targeting software, NGS viewer/calculation systems, and more. Please contact us for details.

Pipeline Pilot Components

We are honor to develop the components for Pipeline Pilot (Accerylys). Please contact us for details.