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Enjoy LSKB's Synonym and Relation Searches.
A New Type of Software for Analyzing Genomes and Genes
Private Data Management Software for Researchers
Determination of the Taxonomy and Indentification of Fungi and Bacteria Based on DNA Sequence Analyses.
Analysis Support Tool for Allele Frequency
LSKB is a knowledge database equipped with a synonym dictionary built from genes and their information, especially gene names and symbols, information about gene and protein functions, and text mined data obtained using the synonym dictionary.
The functions available for LSKB include the search for standard gene symbols from a wide range of keywords for molecules and proteins, the display of a list of proteins that are related to the gene of your interest, and the search for relations among diseases, drugs, genes, and proteins.
Feature One
Synonym Dictionary for Genes with Various Terms
- Outputs standard gene names and symbols from keywords or sequence information.
- Helps to find the appropriate information about genes even in the case that the often-used gene symbols and terms are not standard, the gene names have suddenly changed, an accession number for the gene exists but it is unknown if it is registered, and it helps to identify the gene from its sequence.
- Supports search for genes from expression probe IDs.
- Includes dictionaries for genes of human, mouse, and rat.
- Equipped with dictionaries for diseases, drugs, and proteins.
- As options, ICD10 and/or MedDRA can be added onto the synonym dictionary.
Feature Two
Comprehensive Information about Gene and Protein Functions
- Aggregates information about genes from a variety of databases.
- Finds and displays information about the related genes from a keyword.
- Contains enormous amounts of data due to the inclusion of the synonym dictionary for genes.
- Displays the information about the related genes and proteins for the gene of your interest.
- Outputs the functions of the gene of your interest.
- Can be linked to GenomeViewer to map the gene of your interest onto the genome and to obtain its detailed annotation information.
Feature Three
Text mining database
Relations between genes and genes, genes and diseases, and genes and drugs
- Displays relations among diseases, drugs, genes, and proteins.
- Equipped with text mined information from MEDLINE.
- Reduces your time and labor for mining information about genes.
- Can be customized by adding dictionaries for diseases and drugs.
Supporting Expression Analysis
LSKB has a function to identify genes from the accession IDs used by the standard chips of Agilent, Affymetrix, CodeLink and Illumina in a batch-manner. After the genes are identified, a further analysis can be performed to find the diseases, drugs, and genes that are related to them.
Customization
- Adding your original data to LSKB.
- Linking to the original database built from the searched results found in the dictionaries.
- Creating a link to your original database.
- Linking to BLAST Server and GenomeViewer.
- Creating an original window for displaying the results.
Also, other customizations are possible. For details, please contact World Fusion, Co.
Built-in to the System
LSKB is a database package software. Therefore, in order to use LSKB, a software license from Oracle Enterprise is needed.
License
The license is available for a yearly contract. One license applies for 5 users.
Update for the Databases
The update for the basic dictionaries is carried out 3 to 4 times a year.
Other dictionaries (e.g. MedDRA, ISIS), will be updated according to the license agreements.
The information stated here is subject to change without prior notice. LSKB and GenomeViewer are trademarks of World Fusion, Co. Oracle is a registered trademark of the Oracle Corporation. All other brands and trademarks are the property of their respective holders.
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